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Getting Started

Atomic turns freeform markdown notes (“atoms”) into a semantically connected, AI-augmented knowledge graph.

Atomic has two common ways to run:

  • Desktop app - a local-first Tauri app that starts its own atomic-server sidecar on your machine.
  • Self-hosted server - a headless atomic-server plus optional web frontend for remote access, mobile use, browser clipping, and MCP over HTTP.

Both modes use the same core engine and HTTP API. The desktop app is simpler for one-person local use. Self-hosting is better when you want access from multiple devices or integrations.

When you create or update a note in Atomic, an asynchronous pipeline can automatically:

  1. Chunk the content using markdown-aware boundaries
  2. Generate vector embeddings via your configured AI provider
  3. Extract and assign tags using LLM structured outputs
  4. Build semantic edges to related notes based on embedding similarity

This happens in the background. You can keep writing while Atomic processes the note.

  • Semantic Search - Find ideas by meaning, not just exact keywords.
  • Wiki Synthesis - Generate articles with inline citations to your atoms.
  • Agentic Chat - Converse with your knowledge base using RAG.
  • Spatial Canvas - Visualize atoms and relationships as a force-directed graph.
  • Auto-Tagging - Extract hierarchical tags from new content.
  • Daily Briefings - Summarize recently captured atoms with citations.
  • RSS and URL Ingestion - Save web pages and subscribe to feeds.
  • MCP Integration - Connect Claude and other AI assistants.
  • Mobile Access - Connect the iOS app to a self-hosted server.
SetupBest For
Desktop AppPersonal local use, bundled server, no separate hosting
Self-Hosted ServerRemote access, web UI, mobile, browser extension, MCP over HTTP
iOS AppMobile reading, writing, search, and sharing to a self-hosted server